Index

A

avg_clustering_onella() (in module comet.graph)

avg_shortest_path() (in module comet.graph)

B

backbone_wu() (in module comet.graph)

betweenness() (in module comet.graph) binarise() (in module comet.graph)

C

centers() (comet.connectivity.Jackknife method) (comet.connectivity.SlidingWindow method) (comet.connectivity.TemporalDerivatives method) clean() (in module comet.utils) cluster_ts() (comet.connectivity.CoactivationPatterns method) clustering_coef() (in module comet.graph) CoactivationPatterns (class in comet.connectivity) comet.cifti module comet.connectivity module

comet.graph module comet.multiverse module comet.utils module ConnectivityMethod (class in comet.connectivity) ContinuousHMM (class in comet.connectivity) create() (comet.multiverse.Multiverse method)

D

DCC (class in comet.connectivity) degrees_und() (in module comet.graph) density_und() (in module comet.graph) dfc (comet.connectivity.FlexibleLeastSquares attribute)

diagonal (comet.connectivity.ConnectivityMethod attribute) DiscreteHMM (class in comet.connectivity) distance_bin() (in module comet.graph) distance_wei() (in module comet.graph) dwell_times() (in module comet.utils)

E

EdgeConnectivity (class in comet.connectivity) efficiency() (in module comet.graph) eigenvector_centrality_und() (in module comet.graph) estimate() (comet.connectivity.CoactivationPatterns method) (comet.connectivity.ConnectivityMethod method) (comet.connectivity.ContinuousHMM method) (comet.connectivity.DCC method) (comet.connectivity.DiscreteHMM method) (comet.connectivity.EdgeConnectivity method) (comet.connectivity.FlexibleLeastSquares method) (comet.connectivity.Jackknife method) (comet.connectivity.KSVD method) (comet.connectivity.LeiDA method) (comet.connectivity.PhaseSynchronization method) (comet.connectivity.SlidingWindow method) (comet.connectivity.SlidingWindowClustering method) (comet.connectivity.SpatialDistance method) (comet.connectivity.Static_Covariance method) (comet.connectivity.Static_Mutual_Info method) (comet.connectivity.Static_Partial method) (comet.connectivity.Static_Pearson method) (comet.connectivity.TemporalDerivatives method) (comet.connectivity.WaveletCoherence method)

F

fisher_z (comet.connectivity.ConnectivityMethod attribute)

FlexibleLeastSquares (class in comet.connectivity) fractional_occupancy() (in module comet.utils)

G

get_networks() (in module comet.cifti)

get_results() (comet.multiverse.Multiverse method)

H

handle_negative_weights() (in module comet.graph)

I

integrate() (comet.multiverse.Multiverse method)

invert() (in module comet.graph)

J

Jackknife (class in comet.connectivity)

K

kmeans_cluster() (in module comet.utils)

KSVD (class in comet.connectivity)

L

LeiDA (class in comet.connectivity) load_example() (in module comet.utils) load_multiverse() (in module comet.multiverse)

load_testdata() (in module comet.utils) load_timeseries() (in module comet.utils) logtransform() (in module comet.graph)

M

mat2vec() (comet.connectivity.SlidingWindowClustering method) matching_ind_und() (in module comet.graph) minmax_scale() (in module comet.graph) module comet.cifti comet.connectivity comet.graph comet.multiverse comet.utils

Multiverse (class in comet.multiverse) multiverse_plot() (comet.multiverse.Multiverse method)

N

N_estimates (comet.connectivity.FlexibleLeastSquares attribute) name (comet.connectivity.CoactivationPatterns attribute) (comet.connectivity.ContinuousHMM attribute) (comet.connectivity.DCC attribute) (comet.connectivity.DiscreteHMM attribute) (comet.connectivity.EdgeConnectivity attribute) (comet.connectivity.FlexibleLeastSquares attribute) (comet.connectivity.Jackknife attribute) (comet.connectivity.KSVD attribute) (comet.connectivity.LeiDA attribute) (comet.connectivity.PhaseSynchronization attribute) (comet.connectivity.SlidingWindow attribute) (comet.connectivity.SlidingWindowClustering attribute) (comet.connectivity.SpatialDistance attribute) (comet.connectivity.Static_Covariance attribute) (comet.connectivity.Static_Mutual_Info attribute) (comet.connectivity.Static_Partial attribute) (comet.connectivity.Static_Pearson attribute) (comet.connectivity.TemporalDerivatives attribute) (comet.connectivity.WaveletCoherence attribute)

normalise() (in module comet.graph) notebookToScript() (in module comet.utils) num_transitions() (in module comet.utils)

P

P (comet.connectivity.ConnectivityMethod attribute) pagerank_centrality() (in module comet.graph) parcellate() (in module comet.cifti) participation_coef() (in module comet.graph)

participation_coef_sign() (in module comet.graph) PhaseSynchronization (class in comet.connectivity) postproc() (comet.connectivity.ConnectivityMethod method) (in module comet.graph)

R

randomise() (in module comet.graph)

regular_matrix() (in module comet.graph) run() (comet.multiverse.Multiverse method)

S

save_universe_results() (in module comet.utils) SlidingWindow (class in comet.connectivity) SlidingWindowClustering (class in comet.connectivity) small_world_propensity() (in module comet.graph) small_world_sigma() (in module comet.graph) SpatialDistance (class in comet.connectivity) specification_curve() (comet.multiverse.Multiverse method) state_plots() (in module comet.utils)

Static_Covariance (class in comet.connectivity) Static_Mutual_Info (class in comet.connectivity) Static_Partial (class in comet.connectivity) Static_Pearson (class in comet.connectivity) summarise_state_tc() (in module comet.utils) summary() (comet.multiverse.Multiverse method) surface_plot() (in module comet.cifti) switch_rate() (in module comet.utils) symmetrise() (in module comet.graph)

T

T (comet.connectivity.ConnectivityMethod attribute) TemporalDerivatives (class in comet.connectivity) threshold() (in module comet.graph) time_series (comet.connectivity.ConnectivityMethod attribute)

transition_counts() (in module comet.utils) transition_matrix() (in module comet.utils) transitivity_und() (in module comet.graph) tril (comet.connectivity.ConnectivityMethod attribute)

V

vec2mat() (comet.connectivity.SlidingWindowClustering method)

visualize() (comet.multiverse.Multiverse method)

W

WaveletCoherence (class in comet.connectivity)