Tutorials
=========

The following notebooks provide examples of how to use the Comet library for various analyses.

.. tip::

   The notebooks are included in the `tutorials/` folder of the toolbox and can be downloaded from GitHub: https://github.com/mibur1/comet

.. note::

    This page is actively being updated. Additional tutorials will be added over time.


Dynamic Functional Connectivity (dFC)
-------------------------------------

General Introduction
^^^^^^^^^^^^^^^^^^^^

.. toctree::
   :maxdepth: 1

   notebooks/example_dfc_cont
   notebooks/example_dfc_state1
   notebooks/example_dfc_state2
   notebooks/example_dfc_state3

Data Handling
^^^^^^^^^^^^^

.. toctree::
   :maxdepth: 1

   notebooks/example_dfc_prep1
   notebooks/example_dfc_prep2
   notebooks/example_dfc_prep3


Graph Analysis
--------------

.. toctree::
   :maxdepth: 1

   notebooks/example_graph
   notebooks/example_graph_benchmark

CIFTI Tools
-----------

.. toctree::
   :maxdepth: 1

   notebooks/example_cifti

Multiverse Analysis
-------------------

General Introduction
^^^^^^^^^^^^^^^^^^^^

.. toctree::
   :maxdepth: 1

   notebooks/example_mv_basics
   notebooks/example_mv_load
   notebooks/example_mv_plot
   notebooks/example_mv_structure
   notebooks/example_mv_recipes

Applications
^^^^^^^^^^^^

.. toctree::
   :maxdepth: 1

   notebooks/example_mv_features
   notebooks/example_mv_hurricane
   notebooks/example_mv_abide
   notebooks/example_mv_fmri_sim

Graphical User Interface
------------------------

.. toctree::
   :maxdepth: 1

   notebooks/example_gui