Tutorials
=========

The following notebooks provide examples of how to use the Comet library for various analyses.

.. tip::

   The notebooks are included in the `tutorials/` folder of the toolbox and can be downloaded from GitHub: https://github.com/mibur1/comet

.. note::

    This page is actively being updated and more tutorials will be added over time. Some features listed here might occasionally not
    yet be available on PyPI distributions. You can install the latest development version from GitHub to access all features.


Dynamic Functional Connectivity (dFC)
-------------------------------------

General Introduction
^^^^^^^^^^^^^^^^^^^^

.. toctree::
   :maxdepth: 1

   notebooks/example_dfc_cont
   notebooks/example_dfc_state1
   notebooks/example_dfc_state2
   notebooks/example_dfc_state3

Data Handling
^^^^^^^^^^^^^

.. toctree::
   :maxdepth: 1

   notebooks/example_dfc_prep1
   notebooks/example_dfc_prep2
   notebooks/example_dfc_prep3


Graph Analysis
--------------

.. toctree::
   :maxdepth: 1

   notebooks/example_graph
   notebooks/example_graph_benchmark


CIFTI Tools
-----------

.. toctree::
   :maxdepth: 1

   notebooks/example_cifti


Multiverse Analysis
-------------------

General Introduction
^^^^^^^^^^^^^^^^^^^^

.. toctree::
   :maxdepth: 1

   notebooks/example_mv_basics
   notebooks/example_mv_load
   notebooks/example_mv_plot
   notebooks/example_mv_structure
   notebooks/example_mv_integration
   notebooks/example_mv_recipes
   notebooks/example_mv_hpc


Usage Examples
^^^^^^^^^^^^^^

.. toctree::
   :maxdepth: 1

   notebooks/example_mv_features
   notebooks/example_mv_hurricane
   notebooks/example_mv_abide
   notebooks/example_mv_fmri_sim


Graphical User Interface
------------------------

.. toctree::
   :maxdepth: 1

   notebooks/example_gui